Index _ | A | B | C | D | E | G | H | I | K | L | N | O | P | R | S | U | V | W _ __author__ (in module dfba) __email__ (in module dfba) __version__ (in module dfba) A add_exchange_flux_lb() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_exchange_flux_ub() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_exchange_fluxes() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_initial_conditions() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_kinetic_variables() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_objectives() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_rhs_expression() (dfba.DfbaModel method) (dfba.model.DfbaModel method) add_to_library() (dfba.DfbaModel method) (dfba.model.DfbaModel method) B BuildExtWithoutPlatformSuffix (class in dfba.jit) C change_points (dfba.control.ControlParameter attribute), [1] (dfba.ControlParameter attribute), [1] cobra_model (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] col_indices() (in module dfba.library) compile() (in module dfba.jit) ControlParameter (class in dfba) (class in dfba.control) create() (in module dfba.library) ctrl_parm_expression() (in module dfba.library) CXX_FLAGS (in module dfba.jit) D dfba (module) dfba._version (module) dfba.control (module) dfba.exchange (module) dfba.helpers (module) dfba.jit (module) dfba.library (module) dfba.model (module) dfba.plot (module) dfba.plot.matplotlib (module) dfba.plot.plotly (module) dfba.types (module) dfba.variable (module) DfbaModel (class in dfba) (class in dfba.model) directions (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] E exchange_fluxes (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] ExchangeFlux (class in dfba) (class in dfba.exchange) Expression (in module dfba.types) G get_config() (in module dfba._version) get_cxxflags() (in module dfba.jit) get_ext_filename() (dfba.jit.BuildExtWithoutPlatformSuffix method) get_ext_filename_without_platform_suffix() (in module dfba.jit) get_keywords() (in module dfba._version) get_versions() (in module dfba) (in module dfba._version) git_get_keywords() (in module dfba._version) git_pieces_from_vcs() (in module dfba._version) git_versions_from_keywords() (in module dfba._version) H HANDLERS (in module dfba._version) I id (dfba.control.ControlParameter attribute), [1] (dfba.ControlParameter attribute), [1] (dfba.DfbaModel attribute) (dfba.ExchangeFlux attribute), [1] (dfba.KineticVariable attribute), [1] (dfba.exchange.ExchangeFlux attribute), [1] (dfba.model.DfbaModel attribute) (dfba.variable.KineticVariable attribute), [1] indices() (in module dfba.library) initial_condition (dfba.KineticVariable attribute) (dfba.variable.KineticVariable attribute) initital_condition (dfba.KineticVariable attribute) (dfba.variable.KineticVariable attribute) K kinetic_variables (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] KineticVariable (class in dfba) (class in dfba.variable) L logger (in module dfba.jit) (in module dfba.model) LONG_VERSION_PY (in module dfba._version) lower_bound_expression (dfba.exchange.ExchangeFlux attribute), [1] (dfba.ExchangeFlux attribute), [1] lp_problem() (dfba.DfbaModel method) (dfba.model.DfbaModel method) N NotThisMethod O objectives (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] P PALETTE (in module dfba.plot.matplotlib) plot_concentrations() (in module dfba.plot.matplotlib) (in module dfba.plot.plotly) plot_trajectories() (in module dfba.plot.matplotlib) (in module dfba.plot.plotly) plus_or_dot() (in module dfba._version) Problem (in module dfba.types) R reactions (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] register_vcs_handler() (in module dfba._version) render() (in module dfba._version) render_git_describe() (in module dfba._version) render_git_describe_long() (in module dfba._version) render_pep440() (in module dfba._version) render_pep440_old() (in module dfba._version) render_pep440_post() (in module dfba._version) render_pep440_pre() (in module dfba._version) rhs_expression (dfba.KineticVariable attribute), [1] (dfba.variable.KineticVariable attribute), [1] run_command() (in module dfba._version) S set_parameters() (dfba.control.ControlParameter method) (dfba.ControlParameter method) show_versions() (in module dfba) (in module dfba.helpers) simulate() (dfba.DfbaModel method) (dfba.model.DfbaModel method) solver_data (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] U UnsupportedCompilerException upper_bound_expression (dfba.exchange.ExchangeFlux attribute), [1] (dfba.ExchangeFlux attribute), [1] user_data (dfba.DfbaModel attribute), [1] (dfba.model.DfbaModel attribute), [1] V values (dfba.control.ControlParameter attribute), [1] (dfba.ControlParameter attribute), [1] VersioneerConfig (class in dfba._version) versions_from_parentdir() (in module dfba._version) W write_model_to_file() (in module dfba.library) WriteIndent() (in module dfba.library)